Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SrtA1Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
AOM14876.1
Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.791
Fms21
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.698
dltB
Alanine transporter; Could be involved in the transport of activated D-alanine through the membrane.
      
 0.666
secA_2
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
      
 0.637
AOM14875.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.600
AOM14879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
AOM16874.1
Lectin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.546
AOM17606.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.464
AOM14880.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
SrtC1
Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.457
Your Current Organism:
Enterococcus faecium
NCBI taxonomy Id: 1352
Other names: ATCC 19434, CCUG 542, CFBP 4248, CIP 103014, DSM 20477, E. faecium, JCM 5804, JCM 8727, LMG 11423, LMG:11423, NBRC 100485, NBRC 100486, NCDO 942, NCIMB 11508, NCTC 7171, Streptococcus faecium
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