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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pheDCDecarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (625 aa)    
Predicted Functional Partners:
gadC_3
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.892
nhaC
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.881
tyrS1
tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
     
 0.872
AOM16684.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.820
AOM16608.1
Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.769
arcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.752
glsA
Glutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.
  
  
 0.702
EntB
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.688
entA
Enterocin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.639
esp
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.581
Your Current Organism:
Enterococcus faecium
NCBI taxonomy Id: 1352
Other names: ATCC 19434, CCUG 542, CFBP 4248, CIP 103014, DSM 20477, E. faecium, JCM 5804, JCM 8727, LMG 11423, LMG:11423, NBRC 100485, NBRC 100486, NCDO 942, NCIMB 11508, NCTC 7171, Streptococcus faecium
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