yugI_2 protein (Enterococcus faecium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yugI_2

General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)

Predicted Functional Partners:

AOM17546.1

0.853

AOM15443.1

0.656

patB

0.607

pnp

0.418

leuS_1

0.415

Your Current Organism:

Enterococcus faecium

NCBI taxonomy Id: 1352
Other names: ATCC 19434, CCUG 542, CFBP 4248, CIP 103014, DSM 20477, E. faecium, JCM 5804, JCM 8727, LMG 11423, LMG:11423, NBRC 100485, NBRC 100486, NCDO 942, NCIMB 11508, NCTC 7171, Streptococcus faecium

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOM15443.1	yugI_2	AL014_03855	AL014_15385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0374 family.	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AOM17546.1	patB	AL014_15390	AL014_15380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AOM17546.1	yugI_2	AL014_15390	AL014_15385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
leuS_1	pnp	AL014_13845	AL014_11385	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.526
leuS_1	yugI_2	AL014_13845	AL014_15385	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
patB	AOM17546.1	AL014_15380	AL014_15390	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
patB	yugI_2	AL014_15380	AL014_15385	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
pnp	leuS_1	AL014_11385	AL014_13845	Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.526
pnp	yugI_2	AL014_11385	AL014_15385	Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
yugI_2	AOM15443.1	AL014_15385	AL014_03855	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0374 family.	0.656
yugI_2	AOM17546.1	AL014_15385	AL014_15390	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
yugI_2	leuS_1	AL014_15385	AL014_13845	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.415
yugI_2	patB	AL014_15385	AL014_15380	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
yugI_2	pnp	AL014_15385	AL014_11385	General stress protein; Induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.418

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About