EWM64_g10399 protein (Hericium alpestre) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EWM64_g10399

Uncharacterized protein. (261 aa)

Predicted Functional Partners:

EWM64_g1825

0.922

EWM64_g732

0.922

EWM64_g5901

0.875

EWM64_g3955

0.850

EWM64_g5645

0.821

EWM64_g9703

0.805

EWM64_g7426

0.805

EWM64_g9051

0.752

EWM64_g7488

0.722

EWM64_g5338

0.699

Your Current Organism:

Hericium alpestre

NCBI taxonomy Id: 135208
Other names: H. alpestre

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EWM64_g10399	EWM64_g1825	A0A4Y9ZGS3	A0A4Z0A765	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.922
EWM64_g10399	EWM64_g3955	A0A4Y9ZGS3	A0A4Z0A1J1	Uncharacterized protein.	Uncharacterized protein.	0.850
EWM64_g10399	EWM64_g5338	A0A4Y9ZGS3	A0A4Y9ZWV9	Uncharacterized protein.	Uncharacterized protein.	0.699
EWM64_g10399	EWM64_g5645	A0A4Y9ZGS3	A0A4Y9ZWC7	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.821
EWM64_g10399	EWM64_g5901	A0A4Y9ZGS3	A0A4Y9ZTI6	Uncharacterized protein.	Uncharacterized protein.	0.875
EWM64_g10399	EWM64_g732	A0A4Y9ZGS3	A0A4Z0AAK0	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.922
EWM64_g10399	EWM64_g7426	A0A4Y9ZGS3	A0A4Y9ZSY0	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.805
EWM64_g10399	EWM64_g7488	A0A4Y9ZGS3	A0A4Y9ZR66	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.722
EWM64_g10399	EWM64_g9051	A0A4Y9ZGS3	A0A4Y9ZMA2	Uncharacterized protein.	Uncharacterized protein.	0.752
EWM64_g10399	EWM64_g9703	A0A4Y9ZGS3	A0A4Y9ZLK6	Uncharacterized protein.	Uncharacterized protein.	0.805
EWM64_g1825	EWM64_g10399	A0A4Z0A765	A0A4Y9ZGS3	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.922
EWM64_g1825	EWM64_g5901	A0A4Z0A765	A0A4Y9ZTI6	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.789
EWM64_g1825	EWM64_g732	A0A4Z0A765	A0A4Z0AAK0	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.542
EWM64_g1825	EWM64_g9051	A0A4Z0A765	A0A4Y9ZMA2	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.991
EWM64_g3955	EWM64_g10399	A0A4Z0A1J1	A0A4Y9ZGS3	Uncharacterized protein.	Uncharacterized protein.	0.850
EWM64_g3955	EWM64_g7426	A0A4Z0A1J1	A0A4Y9ZSY0	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.875
EWM64_g3955	EWM64_g9703	A0A4Z0A1J1	A0A4Y9ZLK6	Uncharacterized protein.	Uncharacterized protein.	0.875
EWM64_g5338	EWM64_g10399	A0A4Y9ZWV9	A0A4Y9ZGS3	Uncharacterized protein.	Uncharacterized protein.	0.699
EWM64_g5645	EWM64_g10399	A0A4Y9ZWC7	A0A4Y9ZGS3	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.821
EWM64_g5901	EWM64_g10399	A0A4Y9ZTI6	A0A4Y9ZGS3	Uncharacterized protein.	Uncharacterized protein.	0.875