STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EWM64_g5468SHS2_Rpb7-N domain-containing protein. (153 aa)    
Predicted Functional Partners:
EWM64_g7511
Uncharacterized protein.
    
 0.989
EWM64_g6190
RNA_pol_L_2 domain-containing protein.
   
 0.984
EWM64_g1439
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.981
EWM64_g6102
RNA_pol_Rpb5_N domain-containing protein.
   
 0.980
EWM64_g3241
Uncharacterized protein.
   
 0.979
EWM64_g6888
Uncharacterized protein.
   
 0.978
EWM64_g3701
Uncharacterized protein.
   
 0.977
EWM64_g306
RPOLD domain-containing protein.
   
 0.976
EWM64_g5002
RPOL4c domain-containing protein.
   
 0.975
EWM64_g458
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.975
Your Current Organism:
Hericium alpestre
NCBI taxonomy Id: 135208
Other names: H. alpestre
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