STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000981225_00070Unannotated protein. (282 aa)    
Predicted Functional Partners:
GCA_000981225_01602
Unannotated protein.
   
 0.999
GCA_000981225_01603
Unannotated protein.
   
 0.999
GCA_000981225_00875
Unannotated protein.
   
 0.987
GCA_000981225_00876
Unannotated protein.
   
 0.985
GCA_000981225_05138
Unannotated protein.
   
 0.985
GCA_000981225_05140
Unannotated protein.
   
 0.983
GCA_000981225_00874
Unannotated protein.
   
 0.982
GCA_000981225_00398
Unannotated protein.
  
 0.972
GCA_000981225_02987
Unannotated protein.
   
  0.940
GCA_000981225_05134
Unannotated protein.
   
  0.940
Your Current Organism:
Allosalinactinospora lopnorensis
NCBI taxonomy Id: 1352348
Other names: A. lopnorensis, Allosalinactinospora lopnorensis Guo et al. 2015, CGMCC 4.7074, DSM 45697, Nocardiopsaceae bacterium CA15-2, strain CA15-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.