STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000981225_02818Unannotated protein. (585 aa)    
Predicted Functional Partners:
GCA_000981225_03212
Unannotated protein.
 
0.999
GCA_000981225_05521
Unannotated protein.
 0.999
GCA_000981225_02815
Unannotated protein.
  
 0.993
GCA_000981225_03210
Unannotated protein.
  
 0.993
GCA_000981225_02813
Unannotated protein.
 
  
 0.968
GCA_000981225_03211
Unannotated protein.
 
0.926
GCA_000981225_05158
Unannotated protein.
    
 0.860
GCA_000981225_03632
Unannotated protein.
     
 0.827
GCA_000981225_01759
Unannotated protein.
     
 0.826
GCA_000981225_05157
Unannotated protein.
     
 0.826
Your Current Organism:
Allosalinactinospora lopnorensis
NCBI taxonomy Id: 1352348
Other names: A. lopnorensis, Allosalinactinospora lopnorensis Guo et al. 2015, CGMCC 4.7074, DSM 45697, Nocardiopsaceae bacterium CA15-2, strain CA15-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.