STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000981225_04149Unannotated protein. (433 aa)    
Predicted Functional Partners:
GCA_000981225_02560
Unannotated protein.
 
    0.805
GCA_000981225_05637
Unannotated protein.
    
  0.799
GCA_000981225_04920
Unannotated protein.
    
  0.798
GCA_000981225_02559
Unannotated protein.
 
    0.767
GCA_000981225_01006
Unannotated protein.
     
 0.676
GCA_000981225_04148
Unannotated protein.
       0.654
GCA_000981225_04697
Unannotated protein.
    
 0.623
GCA_000981225_04698
Unannotated protein.
    
 0.623
GCA_000981225_04327
Unannotated protein.
  
 0.594
GCA_000981225_03918
Unannotated protein.
   
 0.562
Your Current Organism:
Allosalinactinospora lopnorensis
NCBI taxonomy Id: 1352348
Other names: A. lopnorensis, Allosalinactinospora lopnorensis Guo et al. 2015, CGMCC 4.7074, DSM 45697, Nocardiopsaceae bacterium CA15-2, strain CA15-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.