STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000981225_04518Unannotated protein. (458 aa)    
Predicted Functional Partners:
GCA_000981225_00400
Unannotated protein.
 
  
  0.762
GCA_000981225_00398
Unannotated protein.
    
 0.720
GCA_000981225_00386
Unannotated protein.
    
  0.702
GCA_000981225_00388
Unannotated protein.
    
  0.606
GCA_000981225_05710
Unannotated protein.
 
  
  0.590
GCA_000981225_01191
Unannotated protein.
  
     0.542
GCA_000981225_00194
Unannotated protein.
  
 
 0.530
GCA_000981225_00193
Unannotated protein.
  
 
 0.514
GCA_000981225_05079
Unannotated protein.
  
 
 0.506
GCA_000981225_00589
Unannotated protein.
 
 0.491
Your Current Organism:
Allosalinactinospora lopnorensis
NCBI taxonomy Id: 1352348
Other names: A. lopnorensis, Allosalinactinospora lopnorensis Guo et al. 2015, CGMCC 4.7074, DSM 45697, Nocardiopsaceae bacterium CA15-2, strain CA15-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.