STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000981225_04960Unannotated protein. (319 aa)    
Predicted Functional Partners:
GCA_000981225_03111
Unannotated protein.
  
     0.747
GCA_000981225_04964
Unannotated protein.
   
  0.700
GCA_000981225_04959
Unannotated protein.
       0.636
GCA_000981225_05682
Unannotated protein.
 
0.517
GCA_000981225_04355
Unannotated protein.
    
  0.473
GCA_000981225_05437
Unannotated protein.
    
  0.473
GCA_000981225_01190
Unannotated protein.
    
   0.455
GCA_000981225_04227
Unannotated protein.
    
   0.455
GCA_000981225_01507
Unannotated protein.
    
   0.454
GCA_000981225_02009
Unannotated protein.
   
   0.443
Your Current Organism:
Allosalinactinospora lopnorensis
NCBI taxonomy Id: 1352348
Other names: A. lopnorensis, Allosalinactinospora lopnorensis Guo et al. 2015, CGMCC 4.7074, DSM 45697, Nocardiopsaceae bacterium CA15-2, strain CA15-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.