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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG48484.1Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.997
uxaC
Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.988
uxaC-2
Rhamnogalacturonan acetylesterase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
AMG48479.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.911
AMG48485.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.860
AMG48501.1
PRD domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.671
AMG49862.1
Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.671
AMG51358.1
Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.671
AL523_02125
Tagatose-bisphosphate aldolase; Catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.548
Your Current Organism:
Enterococcus gallinarum
NCBI taxonomy Id: 1353
Other names: ATCC 49573, CCUG 18658, CECT 970, CIP 103013, DSM 24841, E. gallinarum, JCM 8728, LMG 13129, LMG:13129, NBRC 100675, NCDO 2313, NCIMB 702313, NCTC 12359, Streptococcus gallinarum, strain F87/276, strain PB21
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