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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG48607.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (136 aa)    
Predicted Functional Partners:
AMG48604.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
AMG48605.1
Clp protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.
       0.608
AMG48606.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
AMG48608.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
AMG48609.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
AMG48600.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
AMG48601.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
AMG48602.1
Phage head-tail adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
AMG48603.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
Your Current Organism:
Enterococcus gallinarum
NCBI taxonomy Id: 1353
Other names: ATCC 49573, CCUG 18658, CECT 970, CIP 103013, DSM 24841, E. gallinarum, JCM 8728, LMG 13129, LMG:13129, NBRC 100675, NCDO 2313, NCIMB 702313, NCTC 12359, Streptococcus gallinarum, strain F87/276, strain PB21
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