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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL523_10565RNA helicase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (904 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.970
AMG50170.1
PTS mannose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.852
AMG50169.1
PTS sugar transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.741
sfsA
Sugar fermentation stimulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SfsA family.
       0.662
AMG50783.1
PTS mannose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.645
AMG51023.1
PTS mannose transporter subunit EIIAB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.645
AMG50175.1
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
AMG50167.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.624
AMG50171.1
PTS cellobiose transporter subunit IIC; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
   
 0.529
AMG49946.1
PTS sugar transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.504
Your Current Organism:
Enterococcus gallinarum
NCBI taxonomy Id: 1353
Other names: ATCC 49573, CCUG 18658, CECT 970, CIP 103013, DSM 24841, E. gallinarum, JCM 8728, LMG 13129, LMG:13129, NBRC 100675, NCDO 2313, NCIMB 702313, NCTC 12359, Streptococcus gallinarum, strain F87/276, strain PB21
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