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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG51038.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
AMG49092.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.811
AMG49091.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.749
AMG50341.1
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.698
AMG51034.1
uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.662
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
    0.590
AMG51032.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.558
AL523_07670
Oligo-beta-mannoside permease IIC protein; Frameshifted; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.549
AMG50176.1
PEP phosphonomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.549
recJ
single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
AMG50670.1
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.
  
  
 0.531
Your Current Organism:
Enterococcus gallinarum
NCBI taxonomy Id: 1353
Other names: ATCC 49573, CCUG 18658, CECT 970, CIP 103013, DSM 24841, E. gallinarum, JCM 8728, LMG 13129, LMG:13129, NBRC 100675, NCDO 2313, NCIMB 702313, NCTC 12359, Streptococcus gallinarum, strain F87/276, strain PB21
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