A0A1Y2IUB3 protein (Trametes coccinea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2IUB3

WD40 repeat-like protein. (573 aa)

Predicted Functional Partners:

A0A1Y2J4K5

0.980

A0A1Y2IX69

0.890

A0A1Y2ISX9

0.768

A0A1Y2IZA7

0.763

A0A1Y2J4C7

0.761

A0A1Y2IIW4

0.729

A0A1Y2J4U5

0.720

A0A1Y2J5K6

0.720

A0A1Y2IJD0

0.717

A0A1Y2IYE9

0.714

Your Current Organism:

Trametes coccinea

NCBI taxonomy Id: 1353009
Other names: Pycnoporus coccineus BRFM310, T. coccinea BRFM310, Trametes coccinea BRFM310

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2IIW4	A0A1Y2IJD0	RING/U-box.	PCI domain-containing protein.	0.956
A0A1Y2IIW4	A0A1Y2ISX9	RING/U-box.	PCI domain-containing protein.	0.979
A0A1Y2IIW4	A0A1Y2IUB3	RING/U-box.	WD40 repeat-like protein.	0.729
A0A1Y2IIW4	A0A1Y2IX69	RING/U-box.	Cullin-domain-containing protein; Belongs to the cullin family.	0.981
A0A1Y2IIW4	A0A1Y2IYE9	RING/U-box.	Histone acetyltransferase type B subunit 2.	0.676
A0A1Y2IIW4	A0A1Y2IZA7	RING/U-box.	COP9 signalosome subunit 6.	0.956
A0A1Y2IIW4	A0A1Y2J4C7	RING/U-box.	Mov34-domain-containing protein.	0.974
A0A1Y2IIW4	A0A1Y2J4K5	RING/U-box.	CPSF_A domain-containing protein.	0.999
A0A1Y2IIW4	A0A1Y2J4U5	RING/U-box.	Uncharacterized protein.	0.706
A0A1Y2IIW4	A0A1Y2J5K6	RING/U-box.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.940
A0A1Y2IJD0	A0A1Y2IIW4	PCI domain-containing protein.	RING/U-box.	0.956
A0A1Y2IJD0	A0A1Y2ISX9	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A1Y2IJD0	A0A1Y2IUB3	PCI domain-containing protein.	WD40 repeat-like protein.	0.717
A0A1Y2IJD0	A0A1Y2IX69	PCI domain-containing protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.946
A0A1Y2IJD0	A0A1Y2IYE9	PCI domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.692
A0A1Y2IJD0	A0A1Y2IZA7	PCI domain-containing protein.	COP9 signalosome subunit 6.	0.999
A0A1Y2IJD0	A0A1Y2J4C7	PCI domain-containing protein.	Mov34-domain-containing protein.	0.999
A0A1Y2IJD0	A0A1Y2J4K5	PCI domain-containing protein.	CPSF_A domain-containing protein.	0.931
A0A1Y2IJD0	A0A1Y2J4U5	PCI domain-containing protein.	Uncharacterized protein.	0.801
A0A1Y2IJD0	A0A1Y2J5K6	PCI domain-containing protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.884