STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagAb_2Naphthalene 1,2-dioxygenase/salicylate 5-hydroxylase systems, ferredoxin component. (107 aa)    
Predicted Functional Partners:
fpr
Ferredoxin--NADP reductase.
  
 
 0.906
nagAb_3
Naphthalene 1,2-dioxygenase/salicylate 5-hydroxylase systems, ferredoxin component.
  
  
 
0.904
sufB_2
FeS cluster assembly protein SufB.
       0.587
sumT
Uroporphyrinogen-III C-methyltransferase.
  
  
 0.556
carAc
Ferredoxin CarAc.
  
     0.503
sufB_1
FeS cluster assembly protein SufB.
       0.472
actP
Copper-transporting P-type ATPase.
   
   0.447
gltA
Glutamate synthase (NADPH) large chain.
  
 
 0.444
thiF
Sulfur carrier protein ThiS adenylyltransferase.
  
  
 0.423
glmS_1
Glutamine--fructose-6-phosphate aminotransferase (isomerizing).
     
 0.412
Your Current Organism:
Nitrosocosmicus oleophilus
NCBI taxonomy Id: 1353260
Other names: C. Nitrosocosmicus oleophilus, Candidatus Nitrosocosmicus oleophilus, Thaumarchaeota archaeon MY3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.