STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_02385Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (91 aa)    
Predicted Functional Partners:
DT23_01150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.595
gltX-2
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.500
DT23_10890
Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.493
DT23_12860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.486
DT23_16275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.485
DT23_10585
Lipocalin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.482
DT23_12955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.479
DT23_02380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.461
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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