STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_03050Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (219 aa)    
Predicted Functional Partners:
ftsY
Hypothetical protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
       0.702
DT23_03045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.561
DT23_13910
N-acyl-L-homoserine lactone synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the autoinducer synthase family.
  
     0.496
DT23_03040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.472
DT23_03065
Hypothetical protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.432
topA
Hypothetical protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA sup [...]
       0.430
DT23_18540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.425
DT23_10565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.416
DT23_03060
Multidrug transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.415
DT23_15840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.411
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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