STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_07030X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (394 aa)    
Predicted Functional Partners:
DT23_00965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.
 
 0.861
DT23_07035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
 0.859
ectC
Ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
 
 
 0.853
DT23_04770
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.
  
 0.823
DT23_12345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.790
DT23_00970
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.770
DT23_00960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.764
DT23_00975
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.716
DT23_07215
Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.691
DT23_14575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.673
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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