STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_084452,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (671 aa)    
Predicted Functional Partners:
DT23_10955
Glutamate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.999
DT23_07485
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.984
DT23_07490
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.979
DT23_13005
Glutamate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glutamate synthase family.
  
 0.971
DT23_16205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glutamate synthase family.
  
 0.971
DT23_16970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.967
DT23_12340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.965
narH
With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.963
DT23_11585
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.937
DT23_02910
Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.908
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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