STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsKHypothetical protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (310 aa)    
Predicted Functional Partners:
DT23_08955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.924
DT23_08960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.871
DT23_12905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.870
rbsD
Hypothetical protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
 
 0.863
DT23_08965
ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.853
DT23_08970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.820
DT23_08945
Hypothetical protein; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
 0.782
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.776
DT23_08975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.761
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
 0.725
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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