STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_09210Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ParB family. (319 aa)    
Predicted Functional Partners:
DT23_09205
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.978
DT23_14815
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.908
DT23_09215
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.884
DT23_14805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.782
rsmG
Hypothetical protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.638
DT23_11095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.626
DT23_10800
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.622
DT23_02380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.590
DT23_17430
ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.590
DT23_00825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.448
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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