STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_09940AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (356 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.787
DT23_00970
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.743
DT23_00960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.706
DT23_00965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.
 
     0.701
DT23_00180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.628
DT23_00975
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.627
DT23_04770
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.
  
     0.601
DT23_09935
Phospho-2-dehydro-3-deoxyheptonate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.600
DT23_13210
Trimethylamine methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the trimethylamine methyltransferase family.
  
     0.539
DT23_17075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.527
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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