STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_10585Lipocalin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)    
Predicted Functional Partners:
DT23_01240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.806
DT23_01230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.769
DT23_01210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.765
DT23_01215
Sulfur oxidation protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.763
DT23_01220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.760
DT23_01225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.760
DT23_01195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.757
DT23_01200
Molybdopterin binding oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.757
DT23_18890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.751
DT23_07990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.749
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.