STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_10915Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)    
Predicted Functional Partners:
DT23_10920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.932
DT23_10910
Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.769
DT23_04125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.748
DT23_02370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.677
DT23_07615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.670
DT23_03300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.660
DT23_05220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.647
DT23_09640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.638
tsaD
Protein kinase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.624
DT23_10890
Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.619
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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