STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_11965Hypothetical protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (339 aa)    
Predicted Functional Partners:
DT23_11970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.996
DT23_05960
Putrescine/spermidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.992
DT23_18005
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.991
DT23_05445
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.990
DT23_11975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.972
potA-2
Hypothetical protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.955
DT23_05955
Putrescine/spermidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.936
DT23_05450
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.919
DT23_18000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.908
DT23_05455
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.
 
 
 0.871
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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