DT23_13940 protein (Thioclava indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DT23_13940

Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (338 aa)

Predicted Functional Partners:

DT23_13950

0.999

DT23_13955

0.996

DT23_13945

0.994

DT23_14860

0.935

DT23_01635

0.905

DT23_06555

0.819

DT23_17035

0.815

DT23_09180

0.801

DT23_18575

0.781

cysC

0.679

Your Current Organism:

Thioclava indica

NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DT23_01635	DT23_13940	DT23_01635	DT23_13940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.905
DT23_01635	DT23_18575	DT23_01635	DT23_18575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
DT23_06555	DT23_13940	DT23_06555	DT23_13940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.819
DT23_06555	DT23_13945	DT23_06555	DT23_13945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.887
DT23_06555	DT23_13950	DT23_06555	DT23_13950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.952
DT23_09180	DT23_13940	DT23_09180	DT23_13940	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
DT23_09180	DT23_13945	DT23_09180	DT23_13945	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.838
DT23_09180	DT23_13950	DT23_09180	DT23_13950	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.923
DT23_13940	DT23_01635	DT23_13940	DT23_01635	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.905
DT23_13940	DT23_06555	DT23_13940	DT23_06555	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.819
DT23_13940	DT23_09180	DT23_13940	DT23_09180	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
DT23_13940	DT23_13945	DT23_13940	DT23_13945	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.994
DT23_13940	DT23_13950	DT23_13940	DT23_13950	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
DT23_13940	DT23_13955	DT23_13940	DT23_13955	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
DT23_13940	DT23_14860	DT23_13940	DT23_14860	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
DT23_13940	DT23_17035	DT23_13940	DT23_17035	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
DT23_13940	DT23_18575	DT23_13940	DT23_18575	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.781
DT23_13940	cysC	DT23_13940	DT23_00250	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.	0.679
DT23_13945	DT23_06555	DT23_13945	DT23_06555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.887
DT23_13945	DT23_09180	DT23_13945	DT23_09180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.838

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About