STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_14525Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (416 aa)    
Predicted Functional Partners:
DT23_10990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.974
DT23_10985
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.805
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.804
DT23_04770
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.
    
  0.659
DT23_09995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the DNA photolyase family.
     
 0.526
DT23_04215
Catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.462
DT23_14530
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.444
DT23_14535
Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.444
DT23_14540
Glutaredoxin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.433
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.421
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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