STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_16885CoA-transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family. (523 aa)    
Predicted Functional Partners:
accD
acetyl-CoA carboxylase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 0.989
DT23_16880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.931
DT23_05700
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.929
DT23_16890
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.912
DT23_08910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.877
DT23_16895
Sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family.
 
  
  0.869
DT23_16930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.817
DT23_01145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.813
DT23_01660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.813
DT23_13385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.768
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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