STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_17780Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (451 aa)    
Predicted Functional Partners:
DT23_07490
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.954
DT23_01145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.948
DT23_05700
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.946
DT23_01660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.926
DT23_07485
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.924
DT23_02325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.875
DT23_14285
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.817
DT23_07500
3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.795
DT23_17085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.770
DT23_00170
enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.765
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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