STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_18860Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (192 aa)    
Predicted Functional Partners:
DT23_18855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.989
DT23_08805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.944
DT23_15725
Ketohydroxyglutarate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 
0.783
DT23_03895
Pyruvate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.738
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
 
 0.669
DT23_17815
Galactonate dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.664
zwf
Glucose 6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.612
pgi
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GPI family.
  
 
 0.610
DT23_03315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.596
DT23_16940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.568
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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