STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYVA_36924Fe-4S ferredoxin. (75 aa)    
Predicted Functional Partners:
sdhA
Oxidoreductase.
 
 
 0.967
MYVA_3691
GntR family transcriptional regulator.
 
     0.963
MYVA_3693
ABC transporter substrate-binding protein.
 
     0.949
MYVA_3694
ABC transporter permease.
 
     0.947
MYVA_3695
Nitrate ABC transporter ATP-binding protein.
 
     0.856
MYVA_3794
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.775
MYVA_3265
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
 
 0.725
sdhA1
Succinate dehydrogenase.
 
 
 0.524
MYVA_3266
4Fe-4S ferredoxin.
 
   
 0.464
sdhA2
Succinate dehydrogenase.
  
 
 0.455
Your Current Organism:
Mycolicibacterium vaccae
NCBI taxonomy Id: 1354275
Other names: M. vaccae 95051, Mycobacterium vaccae 95051, Mycolicibacterium vaccae 95051
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.