M896_060400 protein (Ordospora colligata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M896_060400

RNase PH-like exoribonuclease. (207 aa)

Predicted Functional Partners:

M896_121920

0.997

M896_100280

0.997

M896_050190

0.997

M896_051340

0.997

M896_021590

0.997

M896_031030

0.990

M896_041350

0.989

M896_120620

0.919

M896_020670

0.874

M896_041750

0.872

Your Current Organism:

Ordospora colligata

NCBI taxonomy Id: 1354746
Other names: O. colligata OC4, Ordospora colligata OC4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M896_020670	M896_021590	A0A0B2UGQ5	A0A0B2UMZ8	Sof1 domain-containing U3 snoRNP protein.	RNA-binding protein.	0.738
M896_020670	M896_031030	A0A0B2UGQ5	A0A0B2UGA7	Sof1 domain-containing U3 snoRNP protein.	Exoribonuclease R; Belongs to the RNR ribonuclease family.	0.465
M896_020670	M896_041350	A0A0B2UGQ5	A0A0B2UKP3	Sof1 domain-containing U3 snoRNP protein.	Superfamily II RNA helicase.	0.873
M896_020670	M896_041750	A0A0B2UGQ5	A0A0B2ULP6	Sof1 domain-containing U3 snoRNP protein.	Superfamily II RNA helicase.	0.570
M896_020670	M896_050190	A0A0B2UGQ5	A0A0B2UK46	Sof1 domain-containing U3 snoRNP protein.	RNase PH-like protein.	0.747
M896_020670	M896_051340	A0A0B2UGQ5	A0A0B2UL69	Sof1 domain-containing U3 snoRNP protein.	Rrp4-like RNA-binding protein.	0.793
M896_020670	M896_060400	A0A0B2UGQ5	A0A0B2UKH0	Sof1 domain-containing U3 snoRNP protein.	RNase PH-like exoribonuclease.	0.874
M896_020670	M896_100280	A0A0B2UGQ5	A0A0B2UIH3	Sof1 domain-containing U3 snoRNP protein.	Ribonuclease.	0.794
M896_020670	M896_120620	A0A0B2UGQ5	A0A0B2UHP7	Sof1 domain-containing U3 snoRNP protein.	Putative RNA-binding protein.	0.856
M896_020670	M896_121920	A0A0B2UGQ5	A0A0B2UIA0	Sof1 domain-containing U3 snoRNP protein.	Uncharacterized protein.	0.765
M896_021590	M896_020670	A0A0B2UMZ8	A0A0B2UGQ5	RNA-binding protein.	Sof1 domain-containing U3 snoRNP protein.	0.738
M896_021590	M896_031030	A0A0B2UMZ8	A0A0B2UGA7	RNA-binding protein.	Exoribonuclease R; Belongs to the RNR ribonuclease family.	0.996
M896_021590	M896_041350	A0A0B2UMZ8	A0A0B2UKP3	RNA-binding protein.	Superfamily II RNA helicase.	0.964
M896_021590	M896_041750	A0A0B2UMZ8	A0A0B2ULP6	RNA-binding protein.	Superfamily II RNA helicase.	0.851
M896_021590	M896_050190	A0A0B2UMZ8	A0A0B2UK46	RNA-binding protein.	RNase PH-like protein.	0.998
M896_021590	M896_051340	A0A0B2UMZ8	A0A0B2UL69	RNA-binding protein.	Rrp4-like RNA-binding protein.	0.999
M896_021590	M896_060400	A0A0B2UMZ8	A0A0B2UKH0	RNA-binding protein.	RNase PH-like exoribonuclease.	0.997
M896_021590	M896_100280	A0A0B2UMZ8	A0A0B2UIH3	RNA-binding protein.	Ribonuclease.	0.998
M896_021590	M896_120620	A0A0B2UMZ8	A0A0B2UHP7	RNA-binding protein.	Putative RNA-binding protein.	0.516
M896_021590	M896_121920	A0A0B2UMZ8	A0A0B2UIA0	RNA-binding protein.	Uncharacterized protein.	0.997