STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algA_1Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family. (481 aa)    
Predicted Functional Partners:
epsL
Putative sugar transferase EpsL.
  
 
 0.958
ugd
UDP-glucose 6-dehydrogenase.
  
 
 0.955
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
 
 0.948
algC
Phosphomannomutase/phosphoglucomutase.
 
 
 0.947
rfaG
Lipopolysaccharide core biosynthesis protein RfaG.
  
 
 0.938
tuaH
Putative teichuronic acid biosynthesis glycosyltransferase TuaH.
  
 
 0.938
KRH79056.1
Glycosyl transferases group 1.
  
 
 0.928
pgi_1
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.902
pgi_2
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.902
tagH
Teichoic acids export ATP-binding protein TagH.
  
  
 0.878
Your Current Organism:
Ferrovum sp. JA12
NCBI taxonomy Id: 1356299
Other names: F. sp. JA12
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