STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin; Belongs to the bacterioferritin family. (147 aa)    
Predicted Functional Partners:
nasA_2
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.950
KRH79756.1
Hypothetical protein.
       0.781
eutN_1
Ethanolamine utilization protein EutN.
 
     0.753
eutN_2
Ethanolamine utilization protein EutN.
 
     0.742
KRH79750.1
Carboxysome shell carbonic anhydrase.
 
     0.724
KRH79749.1
Carboxysome shell peptide mid-region.
 
     0.685
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.681
parA
Chromosome partitioning protein ParA.
 
    0.676
csoS1A_2
Major carboxysome shell protein 1A.
       0.675
parB
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
      
 0.613
Your Current Organism:
Ferrovum sp. JA12
NCBI taxonomy Id: 1356299
Other names: F. sp. JA12
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