STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glxR_12-hydroxy-3-oxopropionate reductase. (279 aa)    
Predicted Functional Partners:
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.823
KRH78537.1
succinyl-CoA synthetase subunit alpha.
    
  0.719
ygbM
Putative hydroxypyruvate isomerase YgbM; Belongs to the hyi family.
 
 0.716
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
       0.497
KRH78744.1
acyl-CoA dehydrogenase, short-chain specific.
   
 
 0.493
maeB
NADP-dependent malic enzyme.
    
  0.440
hprA
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.422
ttuD
Putative hydroxypyruvate reductase.
    
  0.422
prpD
2-methylcitrate dehydratase.
  
 
  0.412
madD
malonyl-S-ACP:biotin-protein carboxyltransferase MADD.
   
 
  0.410
Your Current Organism:
Ferrovum sp. JA12
NCBI taxonomy Id: 1356299
Other names: F. sp. JA12
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