STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traCDNA primase TraC. (317 aa)    
Predicted Functional Partners:
traG_1
Conjugal transfer protein TraG.
 
    0.910
ptlG
Type IV secretion system protein PtlG.
 
     0.722
KRH78264.1
Type IV secretory pathway, VirB3-like protein.
 
     0.695
KRH78248.1
VirB8 protein.
 
     0.673
KRH78247.1
Conjugal transfer protein.
 
     0.672
virB4_1
Type IV secretion system protein virB4.
 
     0.666
KRH78253.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.646
KRH78456.1
Hypothetical protein.
      0.550
KRH78423.1
Type IV secretion system protein virB10.
 
     0.461
serC_1
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.439
Your Current Organism:
Ferrovum sp. JA12
NCBI taxonomy Id: 1356299
Other names: F. sp. JA12
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