STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRH78279.1Bacterial type II secretion system protein I/J. (126 aa)    
Predicted Functional Partners:
KRH78281.1
General secretion pathway protein K.
 
 
 0.999
KRH78280.1
Hypothetical protein.
  
 0.989
epsE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.979
epsF
Type II secretion system protein F.
 
  
 0.967
gspD
Putative type II secretion system protein D precursor.
 
  
 0.959
xcpT
Type II secretion system protein G precursor.
 
  
 0.954
KRH78278.1
Hypothetical protein.
  
  
 0.856
KRH78282.1
GspL periplasmic domain protein.
  
  
 0.807
KRH78284.1
Hypothetical protein.
     
 0.798
KRH78283.1
General secretion pathway, M protein.
  
  
 0.792
Your Current Organism:
Ferrovum sp. JA12
NCBI taxonomy Id: 1356299
Other names: F. sp. JA12
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