STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutA_2Lactate utilization protein A. (242 aa)    
Predicted Functional Partners:
lutB
Lactate utilization protein B.
 0.999
lutC
Lactate utilization protein C.
 
 
 0.984
sdhB
Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
  0.958
fumB
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.843
maeB
NADP-dependent malic enzyme.
  
 
 0.814
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.801
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
 
 0.745
pbpG
D-alanyl-D-alanine endopeptidase precursor; Belongs to the peptidase S11 family.
       0.741
lpdA
Dihydrolipoyl dehydrogenase.
   
 
 0.720
pta
Phosphate acetyltransferase.
   
 
 0.712
Your Current Organism:
Ferrovum sp. PNJ185
NCBI taxonomy Id: 1356306
Other names: F. sp. PN-J185, Ferrovum sp. PN-J185
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