STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cbn-pes-22CBN-PES-22 protein. (778 aa)    
Predicted Functional Partners:
CAEBREN_12160
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
      
 0.763
CAEBREN_16197
Uncharacterized protein.
    
 
 0.612
Cbn-tag-315
CBN-TAG-315 protein.
    
 
 0.597
Cbn-mvk-1
CBN-MVK-1 protein.
      
 0.579
Cbn-thk-1
Thymidine kinase.
      
 0.579
CAEBREN_18799
Folylpolyglutamate synthase; Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis; Belongs to the folylpolyglutamate synthase family.
   
  
 0.565
CAEBREN_17019
ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.
    
 
 0.533
CAEBREN_29889
Citrate_bind domain-containing protein.
    
 
 0.533
CAEBREN_16381
Solute carrier organic anion transporter family member.
   
 
 0.511
CAEBREN_13213
Solute carrier organic anion transporter family member.
   
 
 0.511
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.