STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_25638NR LBD domain-containing protein. (534 aa)    
Predicted Functional Partners:
CAEBREN_02969
Uncharacterized protein.
      
 0.767
CAEBREN_20344
Uncharacterized protein.
    
 0.711
Cbn-gei-8
CBN-GEI-8 protein.
    
 0.645
CAEBREN_25027
Uncharacterized protein.
    
 
 0.607
CAEBREN_15812
Uncharacterized protein.
   
 0.596
CAEBREN_11369
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
    
 
 0.587
CAEBREN_16802
CS domain-containing protein.
   
  0.582
Cbn-djr-1.2
CBN-DJR-1.2 protein.
    
 
 0.578
Cbn-cua-1
CBN-CUA-1 protein.
      
 0.576
CAEBREN_22582
Uncharacterized protein.
      
 0.576
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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