STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_23001Uncharacterized protein. (650 aa)    
Predicted Functional Partners:
CAEBREN_14859
Uncharacterized protein.
    
 0.998
CAEBREN_14645
Uncharacterized protein.
   
 0.998
Cbn-thoc-2
CBN-THOC-2 protein.
   
 0.997
CAEBREN_31674
WD_REPEATS_REGION domain-containing protein.
    
 0.994
CAEBREN_29385
WD_REPEATS_REGION domain-containing protein.
    
 0.994
Cbn-hel-1
CBN-HEL-1 protein.
   
 0.985
Cbn-aly-2
CBN-ALY-2 protein.
    
 0.963
CAEBREN_04493
RRM domain-containing protein.
    
 0.963
CAEBREN_06614
FoP_duplication domain-containing protein.
    
 0.951
CAEBREN_18049
FoP_duplication domain-containing protein.
    
 0.951
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.