STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_15709Uncharacterized protein. (413 aa)    
Predicted Functional Partners:
Cbn-cdf-1
CBN-CDF-1 protein.
   
  
 0.912
CAEBREN_12377
Uncharacterized protein.
   
  
 0.821
CAEBREN_02279
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
      
 0.773
CAEBREN_22535
Uncharacterized protein.
      
 0.580
CAEBREN_32158
Cnd3 domain-containing protein.
      
 0.579
CAEBREN_16389
Uncharacterized protein.
      
 0.579
CAEBREN_31253
Uncharacterized protein.
   
  
 0.577
CAEBREN_16818
Uncharacterized protein.
   
  
 0.577
Cbn-ttm-1
CBN-TTM-1 protein.
   
  
 0.577
CAEBREN_28735
Uncharacterized protein.
      
 0.572
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.