STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_31999Tyrosine-protein kinase. (550 aa)    
Predicted Functional Partners:
Cbn-unc-89
CBN-UNC-89 protein.
    
 0.908
CAEBREN_11889
Uncharacterized protein.
    
 0.908
CAEBREN_06866
PH domain-containing protein.
    
 0.908
CAEBREN_28154
Uncharacterized protein.
    
 0.908
CAEBREN_32012
Uncharacterized protein.
    
 0.908
Cbn-tap-1
CBN-TAP-1 protein.
  
 0.902
CAEBREN_30669
Uncharacterized protein.
    
 0.896
Cbn-ubc-13
CBN-UBC-13 protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.882
CAEBREN_30323
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.854
CAEBREN_00757
RING-type domain-containing protein.
   
 0.854
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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