STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_17310Uncharacterized protein. (1377 aa)    
Predicted Functional Partners:
CAEBREN_08130
Uncharacterized protein.
    
 0.807
Cbn-mus-81
CBN-MUS-81 protein.
    
 0.776
Cbn-snr-4
Small nuclear ribonucleoprotein Sm D2.
    
 0.764
CAEBREN_06101
Uncharacterized protein.
    
 
 0.761
CAEBREN_22786
WD_REPEATS_REGION domain-containing protein.
   
 
 0.758
Cbn-snr-5
CBN-SNR-5 protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.750
CAEBREN_32721
Tudor domain-containing protein.
    
 0.739
Cbn-smn-1
CBN-SMN-1 protein.
    
 0.739
CAEBREN_10134
Small nuclear ribonucleoprotein G.
    
  0.738
CAEBREN_06873
Uncharacterized protein.
    
 0.726
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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