STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cbn-exp-2CBN-EXP-2 protein; Belongs to the potassium channel family. (513 aa)    
Predicted Functional Partners:
Cbn-rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.986
Cbn-rpl-31
CBN-RPL-31 protein.
   
 0.941
CAEBREN_13637
Ribosomal_L7Ae domain-containing protein.
   
 0.939
Cbn-rpl-24.1
CBN-RPL-24.1 protein.
  
 0.931
Cbn-rpl-35
CBN-RPL-35 protein.
  
 0.930
Cbn-rpl-32
CBN-RPL-32 protein.
  
 0.925
CAEBREN_03513
Uncharacterized protein.
  
 0.925
Cbn-rpl-21
CBN-RPL-21 protein.
  
 0.921
Cbn-rpl-23
CBN-RPL-23 protein; Belongs to the universal ribosomal protein uL14 family.
  
 0.920
Cbn-rpl-15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 0.913
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.