STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_13137C2H2-type domain-containing protein. (1185 aa)    
Predicted Functional Partners:
CAEBREN_09070
Uncharacterized protein.
    
 0.872
CAEBREN_24340
Uncharacterized protein.
    
 0.872
CAEBREN_31669
Uncharacterized protein.
    
 0.872
CAEBREN_02705
Uncharacterized protein.
    
 
 0.733
CAEBREN_18623
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.660
CAEBREN_10215
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.660
CAEBREN_01726
DUF4206 domain-containing protein.
     
 0.641
CAEBREN_15911
RUN domain-containing protein.
     
 0.641
CAEBREN_13217
Arf-GAP domain-containing protein.
      
 0.580
CAEBREN_08068
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
      
 0.579
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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