STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_16149Uncharacterized protein. (629 aa)    
Predicted Functional Partners:
CAEBREN_00372
SMC hinge domain-containing protein.
   
 0.997
Cbn-scc-3
CBN-SCC-3 protein.
   
 0.996
Cbn-pqn-85
Nipped-B protein.
   
 0.985
CAEBREN_22388
SMC_N domain-containing protein.
   
 0.980
Cbn-evl-14
CBN-EVL-14 protein.
   
 0.979
CAEBREN_08615
Uncharacterized protein.
   
 0.979
CAEBREN_10887
Uncharacterized protein.
   
 0.951
CAEBREN_17908
Uncharacterized protein.
   
 0.944
Cbn-him-1
CBN-HIM-1 protein.
   
 0.942
CAEBREN_31075
SMC hinge domain-containing protein.
   
 0.942
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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