CAEBREN_06096 protein (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAEBREN_06096

Uncharacterized protein. (60 aa)

Predicted Functional Partners:

CAEBREN_29911

0.789

CAEBREN_18132

0.770

CAEBREN_29586

0.580

CAEBREN_18265

0.579

CAEBREN_18639

0.579

Cbn-snf-12

0.568

CAEBREN_13567

0.561

Cbn-nipi-3

0.560

CAEBREN_16703

0.560

CAEBREN_09810

0.560

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_06096	CAEBREN_09810	G0NHQ8	G0N0N4	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.560
CAEBREN_06096	CAEBREN_13567	G0NHQ8	G0MTP6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.561
CAEBREN_06096	CAEBREN_16703	G0NHQ8	G0MGT8	Uncharacterized protein.	Uncharacterized protein.	0.560
CAEBREN_06096	CAEBREN_18132	G0NHQ8	G0M9A0	Uncharacterized protein.	Uncharacterized protein.	0.770
CAEBREN_06096	CAEBREN_18265	G0NHQ8	G0M9A3	Uncharacterized protein.	Uncharacterized protein.	0.579
CAEBREN_06096	CAEBREN_18639	G0NHQ8	G0M9A4	Uncharacterized protein.	Uncharacterized protein.	0.579
CAEBREN_06096	CAEBREN_29586	G0NHQ8	G0PN66	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.580
CAEBREN_06096	CAEBREN_29911	G0NHQ8	G0M9A2	Uncharacterized protein.	Uncharacterized protein.	0.789
CAEBREN_06096	Cbn-nipi-3	G0NHQ8	G0MAT9	Uncharacterized protein.	CBN-NIPI-3 protein.	0.560
CAEBREN_06096	Cbn-snf-12	G0NHQ8	G0MQT1	Uncharacterized protein.	CBN-SNF-12 protein.	0.568
CAEBREN_09810	CAEBREN_06096	G0N0N4	G0NHQ8	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.560
CAEBREN_09810	CAEBREN_16703	G0N0N4	G0MGT8	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.760
CAEBREN_09810	CAEBREN_29586	G0N0N4	G0PN66	G_PROTEIN_RECEP_F1_2 domain-containing protein.	RING-CH-type domain-containing protein.	0.758
CAEBREN_09810	Cbn-snf-12	G0N0N4	G0MQT1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	CBN-SNF-12 protein.	0.580
CAEBREN_13567	CAEBREN_06096	G0MTP6	G0NHQ8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.561
CAEBREN_13567	CAEBREN_16703	G0MTP6	G0MGT8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.647
CAEBREN_13567	CAEBREN_18132	G0MTP6	G0M9A0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.455
CAEBREN_13567	CAEBREN_29586	G0MTP6	G0PN66	Protein kinase domain-containing protein.	RING-CH-type domain-containing protein.	0.591
CAEBREN_13567	CAEBREN_29911	G0MTP6	G0M9A2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.579
CAEBREN_13567	Cbn-nipi-3	G0MTP6	G0MAT9	Protein kinase domain-containing protein.	CBN-NIPI-3 protein.	0.638

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About