STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_13709Uncharacterized protein. (410 aa)    
Predicted Functional Partners:
Cbn-cco-2
CBN-CCO-2 protein.
   
 0.903
CAEBREN_09745
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.870
CAEBREN_03266
Uncharacterized protein.
   
 0.865
CAEBREN_14743
Uncharacterized protein.
   
 0.860
Cbn-cco-1
CBN-CCO-1 protein.
   
 0.843
CAEBREN_02979
J domain-containing protein.
   
 0.843
Cbn-lin-42
CBN-LIN-42 protein.
   
 0.831
CAEBREN_03937
Uncharacterized protein.
   
 0.814
CAEBREN_21154
PRORP domain-containing protein.
   
 0.814
Cbn-pmk-1
Mitogen-activated protein kinase.
    
 0.805
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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